Lavenier, Dominique : rechercher sur Z-Library

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1

[IEEE Distributed Processing (IPDPS) - Rome, Italy (2009.05.23-2009.05.29)] 2009 IEEE International Symposium on Parallel & Distributed Processing - Implementing protein seed-based comparison algorithm on the SGI RASC-100 platform

Van-Hoa Nguyen,, Cornu, Alexandre, Lavenier, Dominique

Année:

2009

Langue:

english

Fichier:

PDF, 390 KB

english, 2009

2

[IEEE Distributed Processing Symposium (IPDPS) - Miami, FL, USA (2008.04.14-2008.04.18)] 2008 IEEE International Symposium on Parallel and Distributed Processing - Ordered index seed algorithm for intensive DNA sequence comparison

Lavenier, Dominique

Année:

2008

Langue:

english

Fichier:

PDF, 140 KB

english, 2008

3

[IEEE 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shenzhen, China (2016.12.15-2016.12.18)] 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - DNA mapping using Processor-in-Memory architecture

Lavenier, Dominique, Roy, Jean-Francois, Furodet, David

Année:

2016

Langue:

english

Fichier:

PDF, 698 KB

english, 2016

4

Dynamic programming for LR-PCR segmentation of bacterium genomes

Rumen Andonov, Dominique Lavenier, Philippe Veber, Nicola Yanev

Journal:

Concurrency and Computation: Practice and Experience

Année:

2005

Langue:

english

Fichier:

PDF, 164 KB

english, 2005

5

Cluster of re-configurable nodes for scanning large genomic banks

Stéphane Guyetant, Mathieu Giraud, Ludovic L’Hours, Steven Derrien, Stéphane Rubini, Dominique Lavenier, Frédéric Raimbault

Journal:

Parallel Computing

Année:

2005

Langue:

english

Fichier:

PDF, 654 KB

english, 2005

6

An FPGA systolic array using pseudo-random bit generators for computing Goldbach partitions

Dominique Lavenier

Journal:

Integration, the VLSI Journal

Année:

2000

Langue:

english

Fichier:

PDF, 302 KB

english, 2000

7

Prototyping of VLSI components from a formal specification

Roderick Mcconnell, Dominique Lavenier

Journal:

Journal of Signal Processing Systems

Année:

1996

Langue:

english

Fichier:

PDF, 795 KB

english, 1996

8

An integrated 2D systolic array for spelling correction

Dominique Lavenier

Journal:

Integration, the VLSI Journal

Année:

1993

Langue:

english

Fichier:

PDF, 854 KB

english, 1993

9

Initiation

Patrice Frison, Eric Gautrin, Dominique Lavenier

Journal:

annals of telecommunications - annales des télécommunications

Année:

1991

Fichier:

PDF, 553 KB

1991

10

PLAST: parallel local alignment search tool for database comparison

Van Hoa Nguyen, Dominique Lavenier

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2009

11

Paired-end read length lower bounds for genome re-sequencing

Rayan Chikhi, Dominique Lavenier

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 172 KB

english, 2009

12

Optimal neighborhood indexing for protein similarity search

Pierre Peterlongo, Laurent Noé, Dominique Lavenier, Van Hoa Nguyen, Gregory Kucherov, Mathieu Giraud

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2008

13

Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid,Acyrthosiphon pisum

Fabrice Legeai, Guillaume Rizk, Thomas Walsh, Owain Edwards, Karl Gordon, Dominique Lavenier, Nathalie Leterme, Agnès Méreau, Jacques Nicolas, Denis Tagu, Stéphanie Jaubert-Possamai

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 969 KB

english, 2010

14

Compareads: comparing huge metagenomic experiments

Nicolas Maillet, Claire Lemaitre, Rayan Chikhi, Dominique Lavenier…

Journal:

BMC Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2012

15

[IEEE 2006 IEEE International Conference on Field Programmable Technology - Bangkok, Thailand (2006.12.13-2006.12.15)] 2006 IEEE International Conference on Field Programmable Technology - Seed-based genomic sequence comparison using a FPGA/FLASH accelerator

Lavenier, Dominique, Xinchun, Liu, Georges, Gilles

Année:

2006

Langue:

english

Fichier:

PDF, 140 KB

english, 2006

16

[IEEE 2008 IEEE International Conference on Research, Innovation and Vision for the Future in Computing and Communication Technologies - Ho Chi Minh City, Vietnam (2008.07.13-2008.07.17)] 2008 IEEE International Conference on Research, Innovation and Vision for the Future in Computing and Communication Technologies - Speeding up subset seed algorithm for intensive protein sequence comparison

Nguyen, Van Hoa, Lavenier, Dominique

Année:

2008

Langue:

english

Fichier:

PDF, 335 KB

english, 2008

17

Graphics Processing Unit–Accelerated Quantitative Trait Loci Detection

Chapuis, Guillaume, Filangi, Olivier, Elsen, Jean-Michel, Lavenier, Dominique, Le Roy, Pascale

Journal:

Journal of Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 612 KB

english, 2013

18

[IEEE 2013 IEEE 21st Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM) - Seattle, WA (2013.4.28-2013.4.30)] 2013 IEEE 21st Annual International Symposium on Field-Programmable Custom Computing Machines - FAssem: FPGA Based Acceleration of De Novo Genome Assembly

Varma, B. Sharat Chandra, Paul, Kolin, Balakrishnan, M., Lavenier, Dominique

Année:

2013

Langue:

english

Fichier:

PDF, 233 KB

english, 2013

19

[IEEE 2014 IEEE International Parallel & Distributed Processing Symposium (IPDPS) - Phoenix, AZ, USA (2014.5.19-2014.5.23)] 2014 IEEE 28th International Parallel and Distributed Processing Symposium - Efficient Multi-GPU Computation of All-Pairs Shortest Paths

Djidjev, Hristo, Thulasidasan, Sunil, Chapuis, Guillaume, Andonov, Rumen, Lavenier, Dominique

Année:

2014

Langue:

english

Fichier:

PDF, 263 KB

english, 2014

20

[IEEE 2008 Ninth International Conference on Parallel and Distributed Computing, Applications and Technologies - Dunedin, New Zealand (2008.12.1-2008.12.4)] 2008 Ninth International Conference on Parallel and Distributed Computing, Applications and Technologies - Efficient Parallelization of a Protein Sequence Comparison Algorithm on Manycore Architecture

Ye, Xiaochun, Nguyen, Van Hoa, Lavenier, Dominique, Fan, Dongrui

Année:

2008

Langue:

english

Fichier:

PDF, 352 KB

english, 2008

21

Coding Region Prediction Based on a Universal DNA Sequence Representation Method

Jiang, Xianyang, Lavenier, Dominique, Yau, Stephen S.-T.

Journal:

Journal of Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2008

22

PATH-EQUIVALENT DEVELOPMENTS IN ACYCLIC WEIGHTED AUTOMATA

GIRAUD, MATHIEU, VEBER, PHILLIPE, LAVENIER, DOMINIQUE

Journal:

International Journal of Foundations of Computer Science

Année:

2007

Langue:

english

Fichier:

PDF, 684 KB

english, 2007

23

Combining execution pipelines to improve parallel implementation of HMMER on FPGA

Abbas, Naeem, Derrien, Steven, Rajopadhye, Sanjay, Quinton, Patrice, Cornu, Alexandre, Lavenier, Dominique

Journal:

Microprocessors and Microsystems

Année:

2015

Langue:

english

Fichier:

PDF, 2.20 MB

english, 2015

24

[ACM Press the 2001 ACM/SIGDA ninth international symposium - Monterey, California, United States (2001..-..)] Proceedings of the 2001 ACM/SIGDA ninth international symposium on Field programmable gate arrays - FPGA '01 - Evaluation of the streams-C C-to-FPGA compiler

Frigo, Jan, Gokhale, Maya, Lavenier, Dominique

Année:

2001

Langue:

english

Fichier:

PDF, 177 KB

english, 2001

25

All-Pairs Shortest Path algorithms for planar graph for GPU-accelerated clusters

Djidjev, Hristo, Chapuis, Guillaume, Andonov, Rumen, Thulasidasan, Sunil, Lavenier, Dominique

Journal:

Journal of Parallel and Distributed Computing

Année:

2015

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2015

26

[IEEE 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Belfast, United Kingdom (2014.11.2-2014.11.5)] 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Commet: Comparing and combining multiple metagenomic datasets

Maillet, Nicolas, Collet, Guillaume, Vannier, Thomas, Lavenier, Dominique, Peterlongo, Pierre

Année:

2014

Langue:

english

Fichier:

PDF, 585 KB

english, 2014

27

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

Benoit, Gaëtan, Lemaitre, Claire, Lavenier, Dominique, Drezen, Erwan, Dayris, Thibault, Uricaru, Raluca, Rizk, Guillaume

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2015

28

SPIE Proceedings [SPIE Information Technologies 2000 - Boston, MA (Sunday 5 November 2000)] Reconfigurable Technology: FPGAs for Computing and Applications II - FPGA implementation of the pixel purity index algorithm

Lavenier, Dominique D., Theiler, James P., Szymanski, John J., Gokhale, Maya, Frigo, Janette R., Schewel, John, Athanas, Peter M., Dick, Chris H., McHenry, John T.

Année:

2000

Langue:

english

Fichier:

PDF, 545 KB

english, 2000

29

SPIE Proceedings [SPIE International Symposium on Optical Science and Technology - San Diego, CA (Sunday 30 July 2000)] Imaging Spectrometry VI - Using blocks of skewers for faster computation of pixel purity index

Theiler, James P., Lavenier, Dominique D., Harvey, Neal R., Perkins, Simon J., Szymanski, John J., Descour, Michael R., Shen, Sylvia S.

Année:

2000

Langue:

english

Fichier:

PDF, 216 KB

english, 2000

30

FROM EQUATIONS TO HARDWARE: TOWARDS THE SYSTEMATIC MAPPING OF ALGORITHMS ONTO PARALLEL ARCHITECTURES

FRISON, PATRICE, CHAROT, FRANÇOIS, GAUTRIN, ERIC, LAVENIER, DOMINIQUE, QUINTON, PATRICE, RAIMBAULT, FRÉDÉRIC, WAGNER, CHARLES

Journal:

International Journal of Pattern Recognition and Artificial Intelligence

Année:

1994

Langue:

english

Fichier:

PDF, 987 KB

english, 1994

31

SPIE Proceedings [SPIE International Symposium on Optical Science and Technology - San Diego, CA, USA (Sunday 29 July 2001)] Imaging Spectrometry VII - Systolic array for computing the pixel purity index algorithm on hyperspectral images

Lavenier, Dominique, Descour, Michael R., Shen, Sylvia S., Fabiani, Erwan, Derrien, Steven, Wagner, Charles

Année:

2001

Langue:

english

Fichier:

PDF, 67 KB

english, 2001

32

[IEEE 2016 27th International Workshop on Database and Expert Systems Applications (DEXA) - Porto, Portugal (2016.9.5-2016.9.8)] 2016 27th International Workshop on Database and Expert Systems Applications (DEXA) - Identifying Genetic Variant Combinations Using Skypatterns

Pham, Hoang-Son, Lavenier, Dominique, Termier, Alexandre

Année:

2016

Langue:

english

Fichier:

PDF, 401 KB

english, 2016

33

[ACM Press the 20th European MPI Users' Group Meeting - Madrid, Spain (2013.09.15-2013.09.18)] Proceedings of the 20th European MPI Users' Group Meeting on - EuroMPI '13 - Seamless coarse grained parallelism integration in intensive bioinformatics workflows

Moreews, Francois, Lavenier, Dominique

Année:

2013

Langue:

english

Fichier:

PDF, 4.17 MB

english, 2013

34

Full Sequencing and Genomic Analysis of Three emm 75 Group A Streptococcus Strains Recovered in the Course of an Epidemiological Shift in French Brittany

Rochefort, Aude, Boukthir, Sarrah, Moullec, Séverine, Meygret, Alexandra, Adnani, Yahia, Lavenier, Dominique, Faili, Ahmad, Kayal, Samer

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 137 KB

english, 2017

35

Genome Sequence of the Uncommon Streptococcus pyogenes M/ emm 66 Strain STAB13021, Isolated from Clonal Clustered Cases in French Brittany

Meygret, Alexandra, Vincent, Pascal, Moullec, Séverine, Nacazume, Jessica, Adnani, Yahia, Lavenier, Dominique, Kayal, Samer, Faili, Ahmad

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 157 KB

english, 2016

36

Hardware acceleration of de novo genome assembly

Varma, B. Sharat Chandra, Paul, Kolin, Balakrishnan, M., Lavenier, Dominique

Journal:

International Journal of Embedded Systems

Année:

2017

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2017

37

Reconfigurable Computing || Bioinformatics Applications

Lavenier, Dominique

Année:

2005

Langue:

english

Fichier:

PDF, 347 KB

english, 2005

38

A broad genomic panel of microsatellite loci from Brycon orbignyanus (Characiformes: Bryconidae) an endangered migratory Neotropical fish

Yazbeck, Gabriel M., Oliveira, Rafael Sachetto, Ribeiro, José Mauro, Graciano, Raíssa D., Santos, Rosiane P., Carmo, Fausto M. S., Lavenier, Dominique

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 836 KB

english, 2018

39

Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection

Chapuis, Guillaume, Le Boudic-Jamin, Mathilde, Andonov, Rumen, Djidjev, Hristo, Lavenier, Dominique

Journal:

Scientific Programming

Année:

2015

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2015

40

Complete Assembly of Circular and Chloroplast Genomes Based on Global Optimization

Andonov, Rumen, Djidjev, Hristo, Francois, Sebastien, Lavenier, Dominique

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2019

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2019

41

Global Optimization for Scaffolding and Completing Genome Assemblies

François, Sebastien, Andonov, Rumen, Lavenier, Dominique, Djidjev, Hristo

Journal:

Electronic Notes in Discrete Mathematics

Année:

2018

Langue:

english

Fichier:

PDF, 202 KB

english, 2018

42

Complete Genome Sequences of Two Strains of Streptococcus pyogenes Belonging to an Emergent Clade of the Genotype emm 89 in Brittany, France

Devaere, Marie, Boukthir, Sarrah, Moullec, SÃ©verine, Roux, Emeline, Lavenier, Dominique, Faili, Ahmad, Kayal, Samer, Gill, Steven R.

Journal:

Microbiology Resource Announcements

Année:

2020

Fichier:

PDF, 131 KB

2020

43

SVJedi: Genotyping structural variations with long reads

Lecompte, Lolita, Peterlongo, Pierre, Lavenier, Dominique, Lemaitre, Claire, Robinson, Peter

Journal:

Année:

2020

Fichier:

PDF, 1.53 MB

2020

44

Author Correction: A broad genomic panel of microsatellite loci from Brycon orbignyanus (Characiformes: Bryconidae) an endangered migratory Neotropical fish

Yazbeck, Gabriel M., Oliveira, Rafael Sachetto, Ribeiro, JosÃ© Mauro, Graciano, RaÃssa D., Santos, Rosiane P., Carmo, Fausto M. S., Lavenier, Dominique

Journal:

Scientific Reports

Année:

2020

Fichier:

PDF, 643 KB

2020